Geographic polygenic heterogeneity of obesity across the United States
Abstract Body (Do not enter title and authors here): Introduction: The rising prevalence of obesity represents a public health crisis. Genetic analyses have established the strong heritable basis of body-mass index (BMI), which can be estimated by polygenic risk scores (PRS). However, the geographic distribution of the genetic risk of obesity is unknown.
Hypothesis: BMI and BMI PRS vary across US regions and social indices interplay with BMI PRS.
Methods: We use the nationwide All of Us Research Program to quantify BMI and BMI PRS heterogeneity in the European ancestry across US regions. Social indices include median income, vacant housing, deprivation index, having health insurance and poverty. PRS was computed using LDpred2 with 681275 individuals from GIANT consortium and UK Biobank. We compared heterogeneity within/between ZIP codes and states using linear mixed models. BMI and BMI PRS were adjusted with the first 100 principal components (PC) of ancestry. Our analyses were adjusted for age, sex and the first 10 PCs.
Results: Across 93825 individuals, the mean (standard deviation,SD) age was 58.5(16.9) years, 56369(60%) were female, and the mean (SD) BMI was 29.2(7.2) kg/m2. BMI PRS explained 11.8%(95%CI 11.4-12.1%,P<2x10-16) of BMI variance. Pennsylvania had the highest significant variance explained (R2) by PRS with 13.2%(N=14288,P<2x10-16). BMI and BMI PRS were both spatially clustered (Moran’s I spatial autocorrelation=0.83 and 0.77, P<10-16,respectively). Urban areas had 0.12 SD-lower BMI compared to rural areas(P=4x10-9). Within each state, BMI and BMI PRS varied significantly, e.g. east Pennsylvania has a significantly lower BMI than the west. BMI variance explained by ZIP code was higher than by state (R2=2%,P=2x10-37 vs R2=0.6%,P=7x10-14,respectively). High vacant housing and low median income were the strongest social indices associated with high BMI(P<2x10-16). Per 1-SD higher PRS,1-SD higher vacant housing and lower median income additionally increased BMI by 0.01 and 0.02 SD(interaction P<2x10-16),respectively. High poverty,no health insurance and low deprivation index are independently associated with low BMI.
Conclusion: Understanding BMI differential distributions by genetic effects and social indices may uncover drivers of obesity across the US.
Truong, Buu
( Broad Institute of MIT and Harvard
, Cambridge
, Massachusetts
, United States
)
Nakao, Tetsushi
( Broad Institute of MIT and Harvard
, Cambridge
, Massachusetts
, United States
)
Koyama, Satoshi
( Broad Institute of MIT and Harvard
, Cambridge
, Massachusetts
, United States
)
Bhattacharya, Romit
( Massachusetts General Hospital
, Boston
, Massachusetts
, United States
)
Honigberg, Michael
( Massachusetts General Hospital
, Boston
, Massachusetts
, United States
)
Hornsby, Whitney
( Massachusetts General Hospital
, Boston
, Massachusetts
, United States
)
Natarajan, Pradeep
( Massachusetts General Hospital
, Boston
, Massachusetts
, United States
)
Author Disclosures:
Buu Truong:DO NOT have relevant financial relationships
| Tetsushi Nakao:DO NOT have relevant financial relationships
| Satoshi Koyama:DO NOT have relevant financial relationships
| Romit Bhattacharya:DO have relevant financial relationships
;
Advisor:Casana Care, Inc:Past (completed)
; Advisor:Novartis:Past (completed)
| Michael Honigberg:DO have relevant financial relationships
;
Advisor:Miga Health:Active (exists now)
; Research Funding (PI or named investigator):Novartis:Expected (by end of conference)
; Consultant:Comanche Biopharma:Past (completed)
; Research Funding (PI or named investigator):Genentech:Active (exists now)
| Whitney Hornsby:No Answer
| Pradeep Natarajan:DO have relevant financial relationships
;
Researcher:Allelica:Active (exists now)
; Advisor:Preciseli:Active (exists now)
; Advisor:MyOme:Active (exists now)
; Advisor:Esperion Therapeutics:Active (exists now)
; Advisor:TenSixteen Bio:Active (exists now)
; Consultant:Novartis:Active (exists now)
; Consultant:Genentech / Roche:Active (exists now)
; Consultant:Eli Lilly & Co:Active (exists now)
; Researcher:Novartis:Active (exists now)
; Researcher:Genentech / Roche:Active (exists now)
Cho So Mi, Natarajan Pradeep, Rivera Rachel, Koyama Satoshi, Kim Min Seo, Honigberg Michael, Bhattacharya Romit, Paruchuri Kaavya, Allen Norrina, Hornsby Whitney